by author Publications by date highlights
2022
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Author Correction: Defining the consequences of genetic variation on a proteome-wide scaleNature . 2022 Jun;606(7915):E16. doi: 10.1038/s41586-022-04920-w.
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A Bayesian model selection approach to mediation analysisPLoS Genet . 2022 May 9;18(5):e1010184. doi: 10.1371/journal.pgen.1010184. eCollection 2022 May
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Genome-wide transcript and protein analysis highlights the role of protein homeostasis in the aging mouse heartGenome Res . 2022 May;32(5):838-852. doi: 10.1101/gr.275672.121. Epub 2022 Mar 11.
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Life-long dietary restrictions have negligible or damaging effects on late-life cognitive performance: A key role for genetics in outcomesNeurobiol Aging . 2022 Jul 11;118:108-116. doi: 10.1016/j.neurobiolaging.2022.07.004. Online ahead of print.
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Prediction performance of linear models and gradient boosting machine on complex phenotypes in outbred miceG3 (Bethesda) . 2022 Apr 4;12(4):jkac039. doi: 10.1093/g3journal/jkac039.
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QTLViewer: an interactive webtool for genetic analysis in the Collaborative Cross and Diversity Outbred mouse populationsG3 (Bethesda) . 2022 Jul 29;12(8):jkac146. doi: 10.1093/g3journal/jkac146.
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Age and diet shape the genetic architecture of body weight in diversity outbred miceElife . 2022 Jul 15;11:e64329. doi: 10.7554/eLife.64329.
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Intermittent fasting and caloric restriction interact with genetics to shape physiological health in miceGenetics . 2022 Jan 4;220(1):iyab157. doi: 10.1093/genetics/iyab157.
2021
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INFIMA leverages multi-omics model organism data to identify effector genes of human GWAS variantsenome Biol . 2021 Aug 23;22(1):241. doi: 10.1186/s13059-021-02450-8.
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Genetic mapping of renal glutathione suggests a novel regulatory locus on the murine X chromosome and overlap with hepatic glutathione regulationFree Radic Biol Med . 2021 Oct;174:28-39. doi: 10.1016/j.freeradbiomed.2021.07.035. Epub 2021 Jul 26.
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Quantitative trait mapping in Diversity Outbred mice identifies novel genomic regions associated with the hepatic glutathione redox systemRedox Biol . 2021 Oct;46:102093. doi: 10.1016/j.redox.2021.102093. Epub 2021 Aug 5.
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Regulation of protein abundance in genetically diverse mouse populationsCell Genomics. 2021 August; 1(1). doi: 10.1101/2020.09.18.296657.
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Heritability of fat distributions in male mice from the founder strains of the Diversity Outbred mouse populationG3 (Bethesda) . 2021 May 7;11(5):jkab079. doi: 10.1093/g3journal/jkab079.
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The dihydropyrimidine dehydrogenase gene contributes to heritable differences in sleep in miceCurr Biol . 2021 Dec 6;31(23):5238-5248.e7. doi: 10.1016/j.cub.2021.09.049. Epub 2021 Oct 14.
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The Jackson Laboratory Nathan Shock Center: impact of genetic diversity on agingGeroscience . 2021 Oct;43(5):2129-2137. doi: 10.1007/s11357-021-00421-2. Epub 2021 Jul 23.
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Fasting blood glucose as a predictor of mortality: Lost in translationCell Metab . 2021 Nov 2;33(11):2189-2200.e3. doi: 10.1016/j.cmet.2021.08.013. Epub 2021 Sep 10.
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A systems approach using Diversity Outbred mice distinguishes the cardiovascular effects and genetics of circulating GDF11 from those of its homolog, myostatinG3 (Bethesda) . 2021 Oct 19;11(11):jkab293. doi: 10.1093/g3journal/jkab293.
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Proteomic and transcriptomic profiling reveal different aspects of aging in the kidneyElife . 2021 Mar 9;10:e62585. doi: 10.7554/eLife.62585.
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Intermittent fasting and caloric restriction interact with genetics to shape physiological health in miceGenetics . 2021 Sep 25;220(1):iyab157. doi: 10.1093/genetics/iyab157. Online ahead of print.
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Strain-Specific Peptide (SSP) Interference Reference Sample: A Genetically Encoded Quality Control for Isobaric Tagging StrategiesAnal Chem . 2021 Mar 30;93(12):5241-5247. doi: 10.1021/acs.analchem.0c05483. Epub 2021 Mar 18.
2020
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Bayesian model selection reveals biological origins of zero inflation in single-cell transcriptomicsGenome Biol . 2020 Jul 27;21(1):183. doi: 10.1186/s13059-020-02103-2.
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High-throughput sleep phenotyping produces robust and heritable traits in Diversity Outbred mice and their founder strains.Sleep. 2020 May 12;43(5). doi: 10.1093/sleep/zsz278. PubMed PMID: 32074270; PubMed Central PMCID: PMC7215270.
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A large-scale genome-lipid association map guides lipid identificationNat Metab . 2020 Oct;2(10):1149-1162. doi: 10.1038/s42255-020-00278-3. Epub 2020 Sep 21.
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Nine quick tips for efficient bioinformatics curriculum development and training.PLoS Comput Biol. 2020;16(7):e1008007. Published 2020 Jul 23. doi:10.1371/journal.pcbi.1008007
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Naive Pluripotent Stem Cells Exhibit Phenotypic Variability that Is Driven by Genetic VariationCell Stem Cell. 2020 Aug 11;. doi: 10.1016/j.stem.2020.07.019. [Epub ahead of print]
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Cross-Species Analyses Identify Dlgap2 as a Regulator of Age-Related Cognitive Decline and Alzheimer's Dementiall Rep . 2020 Sep 1;32(9):108091. doi: 10.1016/j.celrep.2020.108091.
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Mapping the Effects of Genetic Variation on Chromatin State and Gene Expression Reveals Loci That Control Ground State PluripotencyCell Stem Cell. 2020 Aug 7;. doi: 10.1016/j.stem.2020.07.005. [Epub ahead of print]
2019
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R/qtl2: Software for Mapping Quantitative Trait Loci with High-Dimensional Data and Multiparent PopulationsGenetics. 2019 Feb;211(2):495-502. doi: 10.1534/genetics.118.301595. Epub 2018 Dec 27.
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Cleaning Genotype Data from Diversity Outbred MiceG3 (Bethesda). 2019 May 7;9(5):1571-1579. doi: 10.1534/g3.119.400165. PubMed PMID: 30877082; PubMed Central PMCID: PMC6505173.
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Cleaning Genotype Data from Diversity Outbred Mice.G3 (Bethesda). 2019 Mar 15. pii: g3.400165.2019. doi: 10.1534/g3.119.400165. [Epub ahead of print]
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A Bayesian mixture model for the analysis of allelic expression in single cells.Nat Commun. 2019 Nov 15;10(1):5188. doi: 10.1038/s41467-019-13099-0. PubMed PMID: 31729374; PubMed Central PMCID: PMC6858378.
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A Bayesian mixture model for the analysis of allelic expression in single cells.Nat Commun. 2019 Nov 15;10(1):5188. doi: 10.1038/s41467-019-13099-0.
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Gene loci associated with insulin secretion in islets from non-diabetic miceJ Clin Invest. 2019 Jul 25;130. doi: 10.1172/JCI129143
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Genetic determinants of gut microbiota composition and bile acid profiles in mice.PLoS Genet. 2019 Aug;15(8):e1008073. doi: 10.1371/journal.pgen.1008073. eCollection 2019 Aug. PubMed PMID: 31465442; PubMed Central PMCID: PMC6715156.
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Genetic determinants of gut microbiota composition and bile acid profiles in mice.PLoS Genet. 2019 Aug;15(8):e1008073. doi: 10.1371/journal.pgen.1008073. eCollection 2019 Aug.
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Mouse genome-wide association and systems genetics identifies Lhfp as a regulator of bone mass.PLoS Genet. 2019 May;15(5):e1008123. doi: 10.1371/journal.pgen.1008123. eCollection 2019 May
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Genetic mapping in Diversity Outbred mice identifies a Trpa1 variant influencing late-phase formalin response.Pain. 2019 Mar 27. doi: 10.1097/j.pain.0000000000001571. [Epub ahead of print]
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The Genome of C57BL/6J "Eve", the Mother of the Laboratory Mouse Genome Reference Strain.G3 (Bethesda). 2019 Jun 5;9(6):1795-1805. doi: 10.1534/g3.119.400071. PubMed PMID: 30996023
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Doxorubicin-Induced Cardiotoxicity in Collaborative Cross (CC) Mice Recapitulates Individual Cardiotoxicity in Humans.G3 (Bethesda). 2019 Aug 8;9(8):2637-2646. doi: 10.1534/g3.119.400232. PubMed PMID: 31263061; PubMed Central PMCID: PMC6686936.
2018
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Erratum: "Diversity Outbred Mice Identify Population-Based Exposure Thresholds and Genetic Factors that Influence Benzene-Induced Genotoxicity".Environ Health Perspect. 2018 Jun 27;126(6):069003. doi: 10.1289/EHP3950. eCollection 2018 Jun.
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Genetic background influences susceptibility to chemotherapy-induced hematotoxicity.Pharmacogenomics J. 2018 Apr;18(2):319-330. doi: 10.1038/tpj.2017.23. Epub 2017 Jun 13.
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Genetic Drivers of Pancreatic Islet FunctionGenetics. 2018 May;209(1):335-356. doi: 10.1534/genetics.118.300864. Epub 2018 Mar 22.
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Hierarchical analysis of RNA-seq reads improves the accuracy of allele-specific expression.Bioinformatics. 2018 Jul 1;34(13):2177-2184. doi: 10.1093/bioinformatics/bty078
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A multi-tissue full lifespan epigenetic clock for mice.Aging (Albany NY). 2018 Oct 21;10(10):2832-2854. doi: 10.18632/aging.101590.
2017
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How mice are indispensable for understanding obesity and diabetes genetics.Curr Opin Endocrinol Diabetes Obes. 2017 Apr;24(2):83-91. doi: 10.1097/MED.0000000000000321
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Genetic Background Influences Susceptibility to Chemotherapy-Induced HematotoxicityPharmacogenomics J. 2017 Jun 13. doi: 10.1038/tpj.2017.23
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Structural Variation Shapes the Landscape of Recombination in Mouse.Genetics. 2017 Jun;206(2):603-619. doi: 10.1534/genetics.116.197988
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Developmental constraint through negative pleiotropy in the zygomatic arch
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High-Resolution Maps of Mouse Reference Populations.G3 (Bethesda). 2017 Oct 5;7(10):3427-3434. doi: 10.1534/g3.117.300188.
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Genomes of the Mouse Collaborative CrossGenetics. 2017 Jun;206(2):537-556. doi: 10.1534/genetics.116.198838.
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Epistatic Networks Jointly Influence Phenotypes Related to Metabolic Disease and Gene Expression in Diversity Outbred Mice.Genetics. 2017 Jun;206(2):621-639. doi: 10.1534/genetics.116.198051.
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Mapping Complex Traits in a Diversity Outbred F1 Mouse Population Identifies Germline Modifiers of Metastasis in Human Prostate Cancer.Cell Syst. 2017 Jan 25;4(1):31-45.e6. doi: 10.1016/j.cels.2016.10.018. Epub 2016 Dec 1
2016
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Diversity Outbred Mice at 21: Maintaining allelic variation in the face of selectionG3 (Bethesda). 2016 Dec 7;6(12):3893-3902. doi: 10.1534/g3.116.035527.
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Defining the consequences of genetic variation on a proteome-wide scaleNature. 2016 Jun 23;534(7608):500-5. doi: 10.1038/nature18270. Epub 2016 Jun 15
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Eric Lander and David Botstein on Mapping Quantitative TraitsGenetics. 2016 May;203(1):1-3. doi: 10.1534/genetics.116.189803. Epub 2016 May 5
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R2d2 Drives Selfish Sweeps in the House MouseMol Biol Evol. 2016 Jun;33(6):1381-95. doi: 10.1093/molbev/msw036. Epub 2016 Feb 15
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Genetic Architectures of Quantitative Variation in RNA Editing PathwaysGenetics. 2016 Feb;202(2):787-98. doi: 10.1534/genetics.115.179481. Epub 2015 Nov 27
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Heritability of in vitro phenotypes exhibited by murine adipose-derived stromal cellsMamm Genome. 2016 Jul 8
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The Mouse Universal Genotyping Array: From Substrains to SubspeciesG3 (Bethesda). 2015 Dec 18;6(2):263-79. doi: 10.1534/g3.115.022087
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Genetic identification of thiosulfate sulfurtransferase as an adipocyte-expressed antidiabetic target in mice selected for leannessNat Med. 2016 Jul;22(7):771-9. doi: 10.1038/nm.4115. Epub 2016 Jun 6
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YBR/EiJ mice: a new model of glaucoma caused by genes on chromosomes 4 and 17Dis Model Mech. 2016 Aug 1;9(8):863-71. doi: 10.1242/dmm.024307. Epub 2016 Jun 9
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Weak Epistasis Generally Stabilizes Phenotypes in a Mouse IntercrossPLoS Genet. 2016 Feb 1;12(2):e1005805. doi: 10.1371/journal.pgen.1005805. eCollection 2016 Feb
2015
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Aging Research Using Mouse ModelsCurr Protoc Mouse Biol. 2015 Jun 1;5(2):95-133. doi: 10.1002/9780470942390.mo140195
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PRDM9 drives evolutionary erosion of hotspots in Mus musculus through haplotype-specific initiation of meiotic recombinationPLoS Genetics. 2015;11(1):e1004916
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Collaborative Cross and Diversity Outbred data resources in the Mouse Phenome DatabaseMamm Genome. 2015 Oct;26(9-10):511-20. doi: 10.1007/s00335-015-9595-6. Epub 2015 Aug 19
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Diet dominates host genotype in shaping the murine gut microbiotaCell Host Microbe. 2015 Jan 14;17(1):72-84. doi: 10.1016/j.chom.2014.11.010. Epub 2014 Dec 18
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Sensitivity to hepatotoxicity due to epigallocatechin gallate is affected by genetic background in diversity outbred miceFood Chem Toxicol 2015;76:19-26
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Genetic properties of the MAGIC maize population: a new platform for high definition QTL mapping in Zea maysGenome Biol. 2015 Sep 11;16:167. doi: 10.1186/s13059-015-0716-z
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A multi-megabase copy number gain causes maternal transmission ratio distortion on mouse chromosome 2PLoS Genetics. 2015;11(2):e1004850
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Diversity Outbred Mice Identify Population Based Exposure Thresholds and Genetic Factors that Influence Benzene-Induced GenotoxicityEnv. Health Persp., 2015;123(3):237-45
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Genome Wide Identification of SARS-CoV Susceptibility Loci Using the Collaborative CrossPLoS Genet. 2015 Oct 9;11(10):e1005504. doi: 10.1371/journal.pgen.1005504. eCollection 2015 Oct
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Lung necrosis and neutrophils reflect common pathways of susceptibility to Mycobacterium tuberculosis in genetically diverse, immune-competent miceDis Model Mech. 2015 Sep;8(9):1141-53. doi: 10.1242/dmm.020867. Epub 2015 Jul 23
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High-Density Genotypes of Inbred Mouse Strains: Improved Power and Precision of Association MappingG3 (Bethesda). 2015 Jul 28;5(10):2021-6. doi: 10.1534/g3.115.020784
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Identification of microRNAs associated with allergic airway disease using a genetically diverse mouse populationBMC Genomics. 2015 Aug 25;16:633. doi: 10.1186/s12864-015-1732-9
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Genetic Analysis of Substrain Divergence in NOD MiceG3. 2015
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Affinity-seq detects genome-wide PRDM9 binding sites and reveals the impact of prior chromatin modifications on mammalian recombination hotspot usageEpigenetics Chromatin. 2015 Sep 7;8:31. doi: 10.1186/s13072-015-0024-6. eCollection 2015.
2014
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Accessing Data Resources in the Mouse Phenome Database for Genetic Analysis of Murine Life Span and Health SpanJ Gerontol A Biol Sci Med Sci. 2014
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Misleading results: don't blame the miceScience. 2014;343(6169):370
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When are results too good to be true?Genetics. 2014;198(2):447-8
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Quantitative trait locus mapping methods for diversity outbred miceG3. 2014;4(9):1623-33
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Integrative genetic analysis of allergic inflammation in the murine lungAm J Respir Cell Mol Biol. 2014 Sep;51(3):436-45. doi: 10.1165/rcmb.2013-0501OC
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High-Resolution Sex-Specific Linkage Maps of the Mouse Reveal Polarized Distribution of Crossovers in Male GermlineGenetics. 2014 Feb 27. doi: 10.1534/genetics.114.161653
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RNA-seq alignment to individualized genomes improves transcript abundance estimates in multiparent populationsGenetics. 2014;198(1):59-73
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Rapid identification of major-effect genes using the collaborative crossGenetics. 2014 Sep;198(1):75-86. doi: 10.1534/genetics.114.163014
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Precise genetic mapping and integrative bioinformatics in Diversity Outbred mice reveals Hydin as a novel pain geneMamm Genome. 2014 Jun;25(5-6):211-22
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Genetic regulation of Zfp30, CXCL1, and neutrophilic inflammation in murine lungGenetics. 2014;198(2):735-45
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High-resolution genetic mapping in the diversity outbred mouse population identifies Apobec1 as a candidate gene for atherosclerosisG3 (Bethesda). 2014 Oct 23;4(12):2353-63. doi: 10.1534/g3.114.014704
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Spontaneous voiding by mice reveals strain-specific lower urinary tract function to be a quantitative genetic traitAm J Physiol Renal Physiol. 2014 Jun 1;306(11):F1296-307
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Genetic Regulation of Female Sexual Maturation and Longevity Through Circulating IGF1J Gerontol A Biol Sci Med Sci 2014 July 28
2013
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Relationship between obesity phenotypes and genetic determinants in a mouse model for juvenile obesityPhysiol Genomics. 2013 Sep 16;45(18):817-26. doi: 10.1152/physiolgenomics.00058.2013
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Modeling host genetic regulation of influenza pathogenesis in the collaborative crossPLoS Pathog. 2013 Feb;9(2):e1003196
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Integration of Mouse and Human Genome-Wide Association Data Identifies KCNIP4 as an Asthma GenePLoS One. 2013;8(2):e56179. doi: 10.1371/journal.pone.0056179
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C57BL/6N Mutation in Cytoplasmic FMRP interacting protein 2 Regulates Cocaine ResponseScience. 2013 Dec 20;342(6165):1508-12. doi: 10.1126/science.1245503.
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High-precision genetic mapping of behavioral traits in the diversity outbred mouse populationGenes Brain Behav. 2013 Feb 21. doi: 10.1111/gbb.12029
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Students as collaborators in systems biology researchScience. 2013 May 31;340(6136):1061-2. doi: 10.1126/science.1229906
2012
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Pla2g12b and Hpn Are Genes Identified by Mouse ENU Mutagenesis That Affect HDL CholesterolPLoS One. 2012;7(8):e43139
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Gene expression patterns in the hippocampus and amygdala of endogenous depression and chronic stress modelsMol Psychiatry. 2012 Jan;17(1):49-61
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What Can Causal Networks Tell Us about Metabolic Pathways?PLoS Comput Biol. 2012 Apr;8(4):e1002458
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The Diversity Outbred Mouse PopulationMamm Genome. 2012 Oct;23(9-10):713-8
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The Genome Architecture of the Collaborative Cross Mouse Genetic Reference PopulationGenetics. 2012 Feb;190(2):389-401
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Discovery of novel variants in genotyping arrays improves genotype retention and reduces ascertainment biasBMC Genomics. 2012 Jan 19;13(1):34
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Genetic Analysis of Hematologic Parameters in Incipient Lines of the Collaborative CrossG3 (Bethesda). 2012 Feb;2(2):157-65
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Using bioinformatics and systems genetics to dissect HDL cholesterol levels in an MRL/MpJ x SM/J intercrossJ Lipid Res. 2012 Jun;53(6):1163-75
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A General Bayesian Approach to Analyzing Diallel Crosses of Inbred StrainsGenetics. 2012 Feb;190(2):413-35
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Discovery of blood transcriptomic markers for depression in animal models and pilot validation in subjects with early-onset major depressionTransl Psychiatry. 2012 Apr 17;2:e101. doi: 10.1038/tp.2012.26
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Adaptive evolution and effective population size in wild house miceMol Biol Evol. 2012 Oct;29(10):2949-55
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High-Resolution Genetic Mapping Using the Mouse Diversity Outbred PopulationGenetics. 2012 Feb;190(2):437-47
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Genetic analysis of albuminuria in Collaborative Cross and multiple mouse intercross populationsAm J Physiol Renal Physiol. 2012 Oct;303(7):F972-81
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Ten Years of the Collaborative CrossGenetics. 2012 Feb;190(2):291-4
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Imputation of single-nucleotide polymorphisms in inbred mice using local phylogenyGenetics. 2012 Feb;190(2):449-58
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Genome-Wide Association Mapping of Quantitative Traits in Outbred MiceG3 (Bethesda). 2012 Feb;2(2):167-74
2011
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The future of model organisms in human disease researchNat Rev Genet. 2011 Jul 18;12(8):575-82. doi: 10.1038/nrg3047
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Genetic analysis of complex traits in the emerging collaborative crossGenome Res. 2011 Aug;21(8):1223-38
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Comparison of unrestrained plethysmography and forced oscillation for identifying genetic variability of airway responsiveness in inbred micePhysiol Genomics. 2011 Jan 11; 43: 1-11
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A Bayesian Framework for Inference of the Genotype-Phenotype Map for Segregating PopulationsGenetics. 2011 Apr;187(4):1163-70
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Uncovering Genes and Regulatory Pathways Related to Urinary Albumin ExcretionJ Am Soc Nephrol. 2011 Jan;22(1):73-81
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Integration of QTL and bioinformatic tools to identify candidate genes for triglycerides in miceJ Lipid Res. 2011 Sep;52(9):1672-82
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Architecture of energy balance traits in emerging lines of the Collaborative CrossAm J Physiol Endocrinol Metab. 2011 Jun;300(6):E1124-34
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Genetic analysis in the Collaborative Cross breeding populationGenome Res. 2011 Aug;21(8):1223-38
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The collaborative cross: a recombinant inbred mouse population for the systems genetic eraILAR J. 2011 Feb 8;52(1):24-31
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Stochastic Variation of Transcript Abundance in C57BL/6J miceBMC Genomics. 2011 Mar 30;12(1):167
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Subspecific origin and haplotype diversity in the laboratory mouseNat Genet. 2011 May 29;43(7):648-55
2010
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Mouse BMD quantitative trait loci show improved concordance with human genome wide association loci when recalculated on a new, common mouse genetic mapJ Bone Miner Res. 2010 Aug;25(8):1808-20
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High fat diet leads to tissue specific changes reflecting risk factors for diseases in DBA/2J micePhysiol Genomics. 2010 Jun;42(1):55-66
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CGDSNPdb: a database resource for error-checked and imputed mouse SNPsDatabase (Oxford). 2010 Jul 6;2010:baq008. Print 2010
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Identification of genetic determinants of IGF-1 levels and longevity among mouse inbred strainsAging Cell. 2010 Oct;9(5):823-36. doi: 10.1111/j.1474-9726.2010.00612.x
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Epistasis contributes to the genetic buffering of plasma HDL cholesterol in micePhysiol Genomics. 2010 Nov 29;42A(4):228-34
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Critical reasoning on causal inference in genome-wide linkage and association studiesTrends Genet. 2010 Dec;26(12):493-8. doi: 10.1016/j.tig.2010.09.002. Epub 2010 Oct 15
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Sequence variation at multiple loci influences red cell hemoglobin concentrationBlood. 2010 Dec 16;116(25):e139-49
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Genetic analysis of albuminuria in aging mice and concordance with loci for human diabetic nephropathy found in a genome-wide association scanKidney Int. 2010 Feb;77(3):201-10
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Coordinated expression domains in Mammalian genomesPLoS One. 2010 Aug 18;5(8). pii: e12158
2009
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Strain-specific effects of rosiglitazone on bone mass, body composition, and serum insulin-like growth factor-IEndocrinology. 2009 Mar;150(3):1330-40
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Genetic factors contributing to obesity and body weight can act through mechanisms affecting muscle weight, fat weight, or bothPhysiol Genomics 2009 Jan 8;36(2):114-126
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A New Standard Genetic Map for the MouseGenetics. 2009 Aug;182(4):1335-44
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Genetic Analysis of Blood Pressure in 8 Mouse Intercross PopulationsHypertension. 2009 Oct;54(4):802-9
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NOD x 129.H2g7 Backcross Delineates 129S1/SvImJ-Derived Genomic Regions Modulating Type 1 Diabetes (T1D) Development In MiceDiabetes. 2009 Jul;58(7):1700-3
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Chromosome Y variants from different inbred mouse strains are linked to differences in the morphologic and molecular responses of cardiac cells to postpubertal testosteroneBMC Genomics. 2009 Apr 7;10:150
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What are microarrays teaching us about sleep?Trends Mol Med. 2009 Feb;15(2):79-87
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A Cmv2 QTL on chromosome X affects MCMV resistance in New Zealand male miceMamm Genome. 2009 Jul;20(7):414-23
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The Effects of Atherogenic Diet on Hepatic Gene Expression Across Mouse StrainsPhysiol Genomics. 2009 Nov 6;39(3):172-82
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PPARgamma2 nuclear receptor controls multiple regulatory pathways of osteoblast differentiation from marrow mesenchymal stem cellsJ Cell Biochem. 2009 Feb 1;106(2):232-46
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Independent Studies in Computational BiologyNCSSSMST Journal. Fall 2009:10-16
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Quantitative Trait Locus Analysis Using J/qtlMethods Mol Biol. 2009;573:175-88
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Identification of genetic loci involved in diabetes using a rat model of depressionMamm Genome. 2009 Aug;20(8):486-97
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Genetic basis of HDL variation in 129/SvImJ and C57BL/6J mice: importance of testing candidate genes in targeted mutant miceJ Lipid Res. 2009 Jan;50(1):116-25
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Four additional mouse crosses improve the lipid QTL landscape and identify Lipg as a QTL geneJ Lipid Res. 2009 Oct;50(10):2083-94
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Haplotype association mapping in miceMethods Mol Biol. 2009;573:213-22
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Importance of randomization in microarray experimental designs with Illumina platformsNucleic Acids Res. 2009 Sep;37(17):5610-8
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Genetic influence on electrocardiogram time intervals and heart rate in aging miceAm J Physiol Heart Circ Physiol. 2009 Jun;296(6):H1907-13
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A customized and versatile high-density genotyping array for the mouseNat Methods. 2009 Sep;6(9):663-6
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Aging in inbred strains of mice: study design and interim report on median lifespans and circulating IGF1 levelsAging Cell. 2009 June; 8(3):277-87
2008
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PPARG by dietary fat interaction influences bone mass in mice and humansJ Bone Miner Res. 2008 Sep; 23(9):1398-408
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Identification of QTL for locomotor activation and anxiety using closely-related inbred strainsGenes Brain Behav. 2008 Oct;7(7):761-9
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Practical Applications of the Bioinformatics Toolbox for Narrowing Quantitative Trait LociGenetics. 2008 Dec;180(4):2227-35
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Idd9/11 genetic locus regulates diabetogenic activity of CD4 T-cells in nonobese diabetic (NOD) miceDiabetes. 2008 Dec;57(12):3273-80
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The Collaborative Cross at Oak Ridge National Laboratory: developing a powerful resource for systems geneticsMamm Genome. 2008 Jun;19(6):382-9
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Naive application of permutation testing leads to inflated type I error ratesGenetics. 2008 Jan;178(1):609-10
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Quantitative trait loci for urinary albumin in crosses between C57BL/6J and A/J inbred mice in the presence and absence of ApoeGenetics. 2008 May;179(1):693-9
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The Collaborative Cross, developing a resource for mammalian systems genetics: a status report of the Wellcome Trust cohortMamm Genome. 2008 Jun;19(6):379-81
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Quantitative trait loci for BMD in an SM/J by NZB/BlNJ intercross population and identification of Trps1 as a probable candidate geneJ Bone Miner Res. 2008 Sep;23(9):1529-37
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Genetic variation in Glp1r expression influences the rate of gastric emptying in miceAm J Physiol Regul Integr Comp Physiol. 2008 Feb;294(2):R362-71
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Relationships of dietary fat, body composition, and bone mineral density in inbred mouse strain panelsPhysiol Genomics. 2008 Mar 14;33(1):26-32
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Overexpression of innate immune response genes in a model of recessive polycystic kidney diseaseKidney Int. 2008 Jan;73(1):63-76
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Genetic influence on immune phenotype revealed strain-specific variations in peripheral blood lineagesPhysiol Genomics. 2008 Aug 15;34(3):304-14
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Applying gene expression, proteomics and single-nucleotide polymorphism analysis for complex trait gene identificationGenetics. 2008 Mar;178(3):1795-805
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Candidate genes for plasma triglyceride, FFA, and glucose revealed from an intercross between inbred mouse strains NZB/B1NJ and NZW/LacJJ Lipid Res. 2008 Jul;49(7):1500-10
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Candidate genes for obesity revealed from a C57BL/6J x 129S1/SvImJ intercrossInt J Obes (Lond). 2008 Jul;32(7):1180-9
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An imputed genotype resource for the laboratory mouseMamm Genome. 2008 Mar;19(3):199-208
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Randomization in laboratory procedure is key to obtaining reproducible microarray resultsPLoS ONE. 2008;3(11):e3724
2007
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Recombinant inbred strain panels: a tool for systems geneticsPhysiol Genomics. 2007 Oct 22;31(2):174-5
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Modifier locus for exencephaly in Cecr2 mutant mice is syntenic to the 10q25.3 region associated with neural tube defects in humansPhysiol Genomics. 2007 Oct 22;31(2):244-51
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Identification of conserved gene expression features between murine mammary carcinoma models and human breast tumorsGenome Biol. 2007;8(5):R76
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Genetic background modifies inner ear and eye phenotypes of jag1 heterozygous miceGenetics. 2007 Sep;177(1):307-11
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Activation of peroxisome proliferator-activated receptor gamma (PPARgamma) by rosiglitazone suppresses components of the insulin-like growth factor regulatory system in vitro and in vivoEndocrinology. 2007 Feb;148(2):903-11
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Macromolecule biosynthesis: a key function of sleepPhysiol Genomics. 2007 Nov 14;31(3):441-57
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Quantitative trait loci associated with blood pressure of metabolic syndrome in the progeny of NZO/HILtJ x C3H/HeJ intercrossesMamm Genome. 2007 Aug;18(8):573-83
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The mouse as a model for human biology: a resource guide for complex trait analysisNat Rev Genet. 2007 Jan;8(1):58-69
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R/qtlDesign: inbred line cross experimental designMamm Genome. 2007 Feb;18(2):87-93
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Genetic analysis of albuminuria in a cross between C57BL/6J and DBA/2J miceAm J Physiol Renal Physiol 2007 Nov;293(5):F1649-56
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PPARgamma2 Regulates a Molecular Signature of Marrow Mesenchymal Stem CellsPPAR Res. 2007;2007:81219
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Characterization of human embryonic stem cell lines by the International Stem Cell InitiativeNat Biotechnol. 2007 Jul;25(7):803-16
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On the subspecific origin of the laboratory mouseNat Genet. 2007 Sep;39(9):1100-7
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2006
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Test- and behavior-specific genetic factors affect WKY hypoactivity in tests of emotionalityBehav Brain Res. 2006 May 15;169(2):220-30
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The X chromosome in quantitative trait locus mappingGenetics. 2006 Dec;174(4):2151-8
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Inheritance patterns of transcript levels in f1 hybrid miceGenetics. 2006 Oct;174(2):627-37
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Quantitative trait loci that determine BMD in C57BL/6J and 129S1/SvImJ inbred miceJ Bone Miner Res. 2006 Jan;21(1):105-12
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Structural model analysis of multiple quantitative traitsPLoS Genet. 2006 Jul;2(7):e114
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Quantitative trait loci for baseline erythroid traitsMamm Genome. 2006 Apr;17(4):298-309
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Conditioning the genome identifies additional diabetes resistance loci in Type 1 diabetes-resistant NOR/Lt miceGenes Immun. 2006 Mar;7(2):184
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Gene expression analysis of mouse chromosome substitution strainsMamm Genome. 2006 Jun;17(6):598-614
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Genetic analysis of the stress-responsive adrenocortical axisPhysiol Genomics. 2006 Nov 27;27(3):362-9
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Complex genetic architecture revealed by analysis of high-density lipoprotein cholesterol in chromosome substitution strains and f2 crossesGenetics. 2006 Oct;174(2):999-1007
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Quantitative trait locus analysis for obesity reveals multiple networks of interacting lociMamm Genome. 2006 Jan;17(1):22-36
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Femur mechanical properties in the F2 Progeny of an NZB/B1NJ x RF/J cross are regulated predominantly by genetic loci that regulate bone geometryJ Bone Miner Res. 2006 Aug;21(8):1256-66
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QTL mapping for genetic determinants of lipoprotein cholesterol levels in combined crosses of inbred mouse strainsJ Lipid Res. 2006 Aug;47(8):1780-90
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2005
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Interacting genetic loci cause airway hyperresponsivenessPhysiol Genomics. 2005 Mar 21;21(1):105-11
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Lineage is an epigenetic modifier of QTL influencing behavioral coping with stressBehav Genet. 2005 Mar;35(2):189-98
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Quantitative trait loci associated with elevated thyroid-stimulating hormone in the Wistar-Kyoto ratEndocrinology. 2005 Feb;146(2):870-8
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Quantitative trait loci for femoral and lumbar vertebral bone mineral density in C57BL/6J and C3h/HeJ inbred strains of mice. (2001).J Bone Miner Res. 2005 Sep;20(9):1701-12; discussion 1700
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Improved statistical tests for differential gene expression by shrinking variance components estimatesBiostatistics. 2005 Jan;6(1):59-75
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Distal Chr 4 harbors a genetic locus (Gct1) fundamental for spontaneous ovarian granulosa cell tumorigenesis in a mouse modelCancer Res. 2005 Feb 15;65(4):1259-64
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Combining data from multiple inbred line crosses improves the power and resolution of quantitative trait loci mappingGenetics. 2005 Mar;169(3):1699-709
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Single and interacting QTLs for cholesterol gallstones revealed in an intercross between mouse strains NZB and SMMamm Genome. 2005 Mar;16(3):152-63
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Kinesin family member 12 is a candidate polycystic kidney disease modifier in the cpk mouseJ Am Soc Nephrol. 2005 Apr;16(4):905-16
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Quantitative trait loci for baseline white blood cell count, platelet count, and mean platelet volumeMamm Genome. 2005 Oct;16(10):749-63
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Conditioning the genome identifies additional diabetes resistance loci in Type I diabetes resistant NOR/Lt miceGenes Immun. 2005 Sep;6(6):528-38
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Quantitative trait locus study design from an information perspectiveGenetics. 2005 May;170(1):447-64
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Quantitative trait mapping in a diallel cross of recombinant inbred linesMamm Genome. 2005 May;16(5):344-55
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Association of a lithogenic Abcg5/Abcg8 allele on Chromosome 17 (Lith9) with cholesterol gallstone formation in PERA/EiJ miceMamm Genome. 2005 Jul;16(7):495-504
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2004
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Mapping quantitative trait loci for vertebral trabecular bone volume fraction and microarchitecture in miceJ Bone Miner Res. 2004 Apr;19(4):587-99
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The Collaborative Cross, a community resource for the genetic analysis of complex traitsNat Genet. 2004 Nov;36(11):1133-7
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Using ANOVA to analyze microarray dataBiotechniques. 2004 Aug;37(2):173-5, 177
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The Collaborative Cross, a community resource for the genetic analysis of complex traitsNat Genet. 2004 Nov;36(11):1133-7
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Genetic analysis of blood pressure in C3H/HeJ and SWR/J micePhysiol Genomics. 2004 Apr 13;17(2):215-20
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A collaborative database of inbred mouse strain characteristicsBioinformatics. 2004 Nov 1;20(16):2857-9
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Quantitative trait loci that determine plasma lipids and obesity in C57BL/6J and 129S1/SvImJ inbred miceJ Lipid Res 2004 Sep;45(9):1624-1632
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Quantitative trait loci analysis for plasma HDL-cholesterol concentrations and atherosclerosis susceptibility between inbred mouse strains C57BL/6J and 129S1/SvImJ. Arterioscler Thromb Vasc Biol 2004 Jan;24(1):161-6
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Selective phenotyping for increased efficiency in genetic mapping studiesGenetics. 2004 Dec;168(4):2285-93
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Influence of sex and diet on quantitative trait loci for HDL cholesterol levels in an SM/J by NZB/BlNJ intercross populationJ Lipid Res. 2004 May;45(5):881-8
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Locating Ath8, a locus for murine atherosclerosis susceptibility and testing several of its candidate genes in mice and humansAtherosclerosis. 2004 Dec;177(2):443-50
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Quantitative trait locus mapping of genes that regulate phospholipid transfer activity in SM/J and NZB/BlNJ inbred miceArterioscler Thromb Vasc Biol. 2004 Jan;24(1):155-60
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Exploration of low-dose estrogen effects: identification of No Observed Transcriptional Effect Level (NOTEL)Toxicol Pathol. 2004 Jul-Aug;32(4):482-92
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Quantitative trait loci that determine lipoprotein cholesterol levels in an intercross of 129S1/SvImJ and CAST/Ei inbred micePhysiol Genomics. 2004 Mar 12;17(1):60-8
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Genetic contributors to lipoprotein cholesterol levels in an intercross of 129S1/SvImJ and RIIIS/J inbred micePhysiol Genomics. 2004 Apr 13;17(2):114-21
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Proteotypic classification of spontaneous and transgenic mammary neoplasmsBreast Cancer Res. 2004;6(6):R668-79
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Identification of quantitative trait loci that modify the severity of hereditary spherocytosis in wan, a new mouse model of band-3 deficiencyBlood. 2004 Apr 15;103(8):3233-40
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Sex- and lineage-specific inheritance of depression-like behavior in the ratMamm Genome. 2004 Aug;15(8):648-62
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A comparison of cDNA, oligonucleotide, and Affymetrix GeneChip gene expression microarray platformsJ Biomol Tech 2004 Dec;15:276-284
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Genetic modulation of tau phosphorylation in the mouseJ Neurosci. 2003 Jan 1;23(1):187-92
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Lith6: a new QTL for cholesterol gallstones from an intercross of CAST/Ei and DBA/2J inbred mouse strainsJ Lipid Res. 2003 Sep;44(9):1763-71
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New quantitative trait loci that contribute to cholesterol gallstone formation detected in an intercross of CAST/Ei and 129S1/SvImJ inbred micePhysiol Genomics. 2003 Aug 15;14(3):225-39
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Quantitative trait loci that determine lipoprotein cholesterol levels in DBA/2J and CAST/Ei inbred miceJ Lipid Res. 2003 May;44(5):953-67
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Genetic analysis of resistance to Type-1 Diabetes in ALR/Lt mice, a NOD-related strain with defenses against autoimmune-mediated diabetogenic stressImmunogenetics. 2003 Oct;55(7):491-6
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Pleiotropy, homeostasis, and functional networks based on assays of cardiovascular traits in genetically randomized populationsGenome Res. 2003 Sep;13(9):2082-91
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Major locus on mouse chromosome 17 and minor locus on chromosome 9 are linked with alopecia areata in C3H/HeJ miceJ Invest Dermatol. 2003 May;120(5):771-5
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Using advanced intercross lines for high-resolution mapping of HDL cholesterol quantitative trait lociGenome Res. 2003 Jul;13(7):1654-64
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Genetics of colitis susceptibility in IL-10-deficient mice: backcross versus F2 results contrasted by principal component analysisGenomics. 2002 Sep;80(3):274-82
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QTL analysis of self-selected macronutrient diet intake: fat, carbohydrate, and total kilocaloriesPhysiol Genomics. 2002 Dec 3;11(3):205-17
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QTL associated with blood pressure, heart rate, and heart weight in CBA/CaJ and BALB/cJ micePhysiol Genomics. 2002 Jul 12;10(1):5-12
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Interacting QTLs for cholesterol gallstones and gallbladder mucin in AKR and SWR strains of micePhysiol Genomics. 2002 Feb 11;8(1):67-77
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Quantitative trait loci for femoral and lumbar vertebral bone mineral density in C57BL/6J and C3H/HeJ inbred strains of miceJ Bone Miner Res. 2001 Jul;16(7):1195-206
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A major quantitative trait locus on chromosome 3 controls colitis severity in IL-10-deficient miceProc Natl Acad Sci U S A 2001 Nov 20;98:13820-13825
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Genetic control of susceptibility to UV-induced immunosuppression by interacting quantitative trait lociGenes Immun. 2000;1(4):251-9
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Linkage mapping in populations with karyotypic rearrangementsJ Hered. 2000 Nov-Dec;91(6):423-8
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A new method for characterizing replacement rate variation in molecular sequences. Application of the Fourier and wavelet models to Drosophila and mammalian proteinsGenetics. 2000 Jan;154(1):381-95
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Mapping quantitative trait loci for serum insulin-like growth factor-1 levels in miceBone. 2000 Oct;27(4):521-8
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Quantitative trait loci for bone density in C57BL/6J and CAST/EiJ inbred miceMamm Genome. 1999 Nov;10(11):1043-9
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Identification of QTL's controlling acylsugar fatty acid composition in an intraspecific population of Lycopersicon pennellii (Corr.) D'ArcyTheor Appl Genetics 1999 99(1-2):373-381
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The role of subjectivity in reconstructing ancestral character states: A Bayesian approach to unknown rates, states and transformation asymmetriesSyst Biol 1999;48:651-664 doi.org/10.1080/106351599260229
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Multigenic and imprinting control of ovarian granulosa cell tumorigenesis in miceCancer Res. 1998 Aug 15;58(16):3694-9
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